PHYLOGENETIC ASSESSMENT OF GIANT CLAMS (TRIDACNIDAE) USING PARTIAL AMINO ACIDS SEQUENCES OF CYTOCHROME C OXIDASE I GENE

Authors

  • Agus Nuryanto Faculty of Biology, Jenderal Soedirman University, Purwokerto
  • Dedi Nuryadi Department of Biology, Faculty of Mathematics and Life Sciences, Bogor Agricultural University, Darmaga Campus, Bogor, Indonesia
  • D. Soedharma Faculty of Fisheries and Manrine Sciences, Bogor Agricultural University
  • Blohm D Department of Biology and Molecular Genetics, FB2-UFT, University of Bremen

DOI:

https://doi.org/10.11598/btb.2007.14.2.11

Abstract

Phylogenetic assessment of the giant clams need to be improved using various genetic markers since their relaionships are plagued by inconsistency result of several studies. This is especially true for the species under sub-genus Chametrachea. Here we studied the phylogeny of the giant clams using amino acid sequence of the mitochondrial COI gene. This study is aimed to assess and better understand the relationships of the giant clams, especially for three species under subgenus Chametrachea. The result showed close proximity between T. crocea and T. squamosa and between T. maxima and T. gigas.  However, amino acids sequences of cytochrome c oxidase I gene was not strong enough to discriminate between T. crocea and T. squamosa. The majority of mutations were hydrophobic to hydrophilic amino acids.

Downloads

Download data is not yet available.
BIOTROPIA Vol 14 No 2 (December 2007)

Downloads

Published

2008-09-02

How to Cite

Nuryanto, A., Nuryadi, D., Soedharma, D., & D, B. (2008). PHYLOGENETIC ASSESSMENT OF GIANT CLAMS (TRIDACNIDAE) USING PARTIAL AMINO ACIDS SEQUENCES OF CYTOCHROME C OXIDASE I GENE. BIOTROPIA - The Southeast Asian Journal of Tropical Biology, 14(2), 22–31. https://doi.org/10.11598/btb.2007.14.2.11

Issue

Vol. 14 No. 2 (2007)

Section

Research Paper

License

Authors who publish with this journal agree with the following terms:

  1. Authors retain copyright and grant the journal right of first publication, with the work 1 year after publication simultaneously licensed under a Creative Commons attribution-noncommerical-noderivates 4.0 International License that allows others to share, copy and redistribute the work in any medium or format, but only where the use is for non-commercial purposes and an acknowledgement of the work's authorship and initial publication in this journal is mentioned.
  2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
  3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).