ISOLATING MICROSATELLITE FROM Amorphophallus variabilis AND ITS APPLICATION FOR POPULATION STUDY IN DRAMAGA CONSERVATION FOREST, INDONESIA
Downloads
Abdul-Muneer PM. 2014. Application of microsatellite markers in conservation genetics and fisheries management: Recent advance in population structure analysis and conservation strategies. Genet Res Internat 2014: ID691759. doi:10.1155/2014/691759.
Alonso-Sande M, Teijeiro-Osorio D, Remuñán-López C, Alonso MJ. 2009. Glucomannan, a promising polysaccharide for biopharmaceutical purposes. Eur J Pharm Biopharm 72:453–62.
Csencsics D, Brodbeck S, Holderegger R. 2010. Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typia minima) using next-generation sequencing technology. J Hered 101(6):789–93. doi:10.1093/jhered/esq069.
Fatimah, Sukma D. 2011. Development of sequence-based microsatellite marker for orchid Phalaenopsis. HAYATI J Biosci 18(2):71–6.
Jansen PCM, van der Wilk C, Hetterscheid WLA. 1996. Amorphophallus Blume ex Decaisne. In: Flach M, Rumawas F, editors. PROSEA 9: Plant Yielding Non-seed Carbohydrates. Leiden (NL): Backhuys Publication. p. 45–50.
Kite GC, Hetterscheid WLA. 1997. Inflorescence odors of Amorphophallus pseudodracontium and A. paeoniifolius (Araceae). Phytochemistry 46(1):71–5.
Leimena HEP, Subahar TS, Adianto. 2007. Population structure of topshells (Trochus niloticus) in Saparua Island, Central Moluccas, Indonesia. BIOTROPIA 14(2):52–61. doi:10.11598/btb.2007.14.2.18.
Li O, Zhao Y, Guo N, Lu C, Sun X. 2009. Effects of sample size and loci number on genetic diversity in wild population of grass carp revealed by SSR. Zool Res 30(2):121–30.
Lian C, Hogetsu T. 2002. Development of microsatellite markers in black locust (Robinia pseudoacacia) using a dual-suppression-PCR technique. Mol Ecol Notes 2:211–3.
Lian CL, Wadud MA, Geng QF, Shimatani K, Hogetsu T. 2006. An improved technique for isolating codominant compound microsatellite markers. J Plant Res 119:415–7.
Lian C, Zhou Z, Hogetsu T. 2001. A simple method for developing microsatellite markers using amplified fragment of inter-simple sequence repeat (ISSR). J Plant Res 114:381–5.
Marshall TC, Slate J, Kruuk L, Pemberton JM. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Mol Ecol 7:639–55.
Nachimuthu VV, Muthurajan R, Duraialaguraja S, Sivakami R, Pandian BA, Ponniah G, ... Sabariappan R. 2015. Analysis of population structure and genetic diversity in rice germplasm using SSR markers: An initiative towards association mapping of agronomic traits in Oryza sativa. Rice 8:30. doi:10.1186/s12284-015-0062-5.
Nei M. 1972. Genetic distance between populations. Amer Nat 106:283–91.
Nuryanto A, Susanto AH. 2010. Genetic variability of Polymesoda erosa population in the Segara Anakan Cilacap. BIOTROPIA 17(1):22–30.
Ohtsuki T. 1968. Studies on reserve carbohydrates of four Amorphophallus species, with special reference to mannan. Bot Mag Tokyo 81:119–26.
Pasquet RS, Peltier A, Hufford MB, Oudin E, Saulnier J, Paul L, ... Gepts P. 2008. Long-distance pollen flow assessment through evaluation of pollinator foraging range suggests transgene escape distance. PNAS 105(36):13456–61.
Rousset F. 2008. GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resources 8:103–6.
Safii I. 1981. Study on extraction of mannan flour of iles-iles (A. variabilis) [Undergraduate Thesis]. Faculty of Agricultural Technology, Institut Pertanian Bogor. 81 p. (in Indonesian).
Santosa E. 2017. DNA preparation of Amorphophallus paeoniifolius for SSR evaluation. Available from: http://www.protocol.io
. doi:10.17504/protocols.io.jjdcki6.
Santosa E, Sugiyama N, Hikosaka S, Takano T. 2004. Classification of Amorphophallus variabilis in West Java, Indonesia based on morphological characteristics of inflorescences. Jpn J Trop Agric 48:25–34.
Santosa E, Sugiyama N, Hikosaka S, Takano T, Kubota N. 2005. Intercropping patterns in cacao, rubber, and timber plantations in West Java, Indonesia. Jpn J Trop Agric 49(1):21–9.
Santosa E, Lian CL, Pisooksantivatana Y, Sugiyama N. 2007. Isolation and characterization of polymorphic microsatellite markers in Amorphophallus paeoniifolius (Dennst.) Nicolson, Araceae. Mol Ecol Notes 7:814–7.
Santosa E, Mine Y, Nakata M, Lian C, Sugiyama N. 2010. Genetic diversity of cultivated elephant foot yam (Amorphophallus paeoniifolius) in Kuningan, West Java as revealed by microsatellite markers. J Appl Hort 12(2):125–8.
Santosa E, Sugiyama N, Kawabata K, Hikosaka S. 2012. Genetic diversity of Amorphophallus variabilis using AFLP. J Agron Indonesia 40(1):62–8.
Sugiyama N, Santosa E. 2008. Edible Amorphophallus in Indonesia: A potential crop in agroforestry. Yogyakarta (ID): Gadjah Mada University Press. 125 p.
Wiyani L. 1988. Extraction and characterization of mannan from white corm iles-iles (A. variabilis, Bl.) [Undergraduate Thesis]. Faculty of Agricultural Technology, Institut Pertanian Bogor. 129 p. (in Indonesian).
Yuzammi. 2000. A taxonomic revision of the terrestrial and aquatic Aroid (Araceae) in Java [Thesis]. School of Biological Science, Faculty of Life Science, University of New South Wales. 359 p.
Zhang SL, Liu PY, Sun YM. 1998. Artificial adjustment of flower period and hybridizing techniques of Amorphophallus konjac. Acta Bot Yunn 0(Suppl 5):62–6.
Zhou Z, Miwa M, Hogetsu T. 1999. Analysis of genetic structure of a Suillus grevillei population in a Larix kaempferi stand by polymorphism of inter-simple sequence repeat (ISSR). New Phytol 144:55–63.
Copyright (c) 2018 BIOTROPIA - The Southeast Asian Journal of Tropical Biology

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Authors who publish with this journal agree with the following terms:
- Authors retain copyright and grant the journal right of first publication, with the work 1 year after publication simultaneously licensed under a Creative Commons attribution-noncommerical-noderivates 4.0 International License that allows others to share, copy and redistribute the work in any medium or format, but only where the use is for non-commercial purposes and an acknowledgement of the work's authorship and initial publication in this journal is mentioned.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).




