DIVERSITY OF ENDOPHYTIC FUNGI ASSOCIATED WITH FRUITS AND LEAVES OF TAMARIND (Tamarindusindica L.) BASED O N ITS RIBOSOMAL DNA SEQUENCES
Downloads
Plant-associated microbes are among the important natural resources that abundantly exist in natural environment such as endophytic fungi. The studies on endophytic fungi in medicinal plants have allowed the discovery of numerous fungi species and their hidden potentials. Therefore, this study focused on the isolation and identification of endophytic fungi from several plant parts of tamarind such as leaves and fruits. A total of 69 fungal cultures were successfully isolated and identified into 33 distinct species from 14 genera based on morphological characteristics and internal transcribed spacer (ITS) sequence analysis using a Maximum Likelihood method. There were six different species obtained from the genus Colletotrichum (C. aenigma, C. brevisporum, C. cobbittiense, C. fructicola, C. gloeosporioides and C. siamense), and Diaporthe (D. arecae, D. ceratozamiae, D. phaseolorum, D. pseudomangiferae, D. pseudooculi and D. pseudophoenicicola), four species of Aspergillus (A. aculeatus, A. carbonarius, A. flavus and A. tubingensis), three species of Curvularia (C. aeria , C. geniculata and C. lunata) and Nigrospora (N. lacticolonia, N. oryzae and N. sphaerica), two species of Lasiodiplodia (L. pseudotheobromae and L. theobromae) and Penicillium (P. rolfsii and P. verruculosum). Other fungal species that were also identified are Botryosphaeria mamane, Fusarium solani, Perenniporia tephropora, Phyllosticta fallopiae, Sarcostroma bisetulatum, Trichoderma asperellum and Xylaria feejeensis. The isolates were grouped into different clades according to their class. In conclusion, endophytic fungi isolated from tamarind plant are diverse and provides an insight into species diversity of endophytic fungi in tamarind.
Boddy L. 2016. Fungi, ecosystems, and global change. In: The Fungi (pp. 361–400). Oxford, London: Academic Press.
Bout-ou S, Ndiaye F, Diouf M, Diop T, Van Damme P. 2010. Tamarind (Tamarindus indica L.) parkland mycorrhizal potential within three agro-ecological zones of Senegal. Fruits 65(6):377–385.
Cannon PF, Damm U, Johnston PR, Weir BS. 2012. Colletotrichum—current status and future directions. Studies in Mycology 73:181–213.
Chen J, Zhang LC, Xing YM, Wang YQ, Xing XK, Zhang DW, Liang HQ, Guo SX. 2013. Diversity and taxonomy of endophytic Xylariaceous fungi from medicinal plants of Dendrobium (Orchidaceae). PLoS One.
Danggomen A, Visarathanonth N, Manoch L, Piasai O. 2013. Morphological studies of endophytic and plant pathogenic Phomopsis liquidambaris and Diaporthe phaseolorum (P. phaseoli anamorph) from healthy plants and diseased fruits. Thai Journal of Agricultural Science.
Fong YK, Anuar S, Lim HP, Tham FY, Sanderson FR. 2000. A modified filter paper technique for long-term preservation of some fungal cultures. Mycologist 14:121–130.
Gomes RR, Glienke C, Videira SIR, Lombard L, Groenewald JZ, Crous PW. 2013. Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi. Persoonia 31(1):1–41.
Gomzhina MM, Gannibal PB. 2018. First report of the fungus Diaporthe phaseolorum on sunflower in Russia. Microbiology Independent Research Journal 5(1):65–70.
González V, Tello ML. 2011. The endophytic mycota associated with Vitis vinifera in central Spain. Fungal Diversity 47:29–42.
Hanada RE, Pomella AWV, Costa HS, Bezerra JL, Loguercio LL, Pereira JO. 2010. Endophytic fungal diversity in Theobroma cacao and Theobroma grandiflorum and their potential for growth promotion and biocontrol of black pod disease. Fungal Biology.
Gu Q, Fan FF, Jiao Q, Liu QL, Chen SF. 2018. Botryosphaeriaceae from Eucalyptus plantations and adjacent plants in China. Persoonia 40:63–95.
Manamgoda DS, Udayanga D, Cai L, Chukeatirote E, Hyde KD. 2013. Endophytic Colletotrichum from tropical grasses with a new species C. endophytica. Fungal Diversity 61(1):107–115.
Meena C, Bhatnagar P, Meena RR, Prahlad VC, Kumar A. 2018. First report of black pod in tamarind due to Aspergillus niger from India. International Journal of Current Microbiology and Applied Sciences 7(4):1127–1130.
Mishra Y, Singh A, Batra A, Sharma MM. 2014. Understanding the biodiversity and biological applications of endophytic fungi: A review. Journal of Microbial Biochemistry and Technology S8:004. doi:10.4172/1948-5948.S8-004
Nadumane VK, Venkatachalam P, Gajaraj B. 2016. Aspergillus applications in cancer research. In: New and Future Developments in Microbial Biotechnology and Bioengineering (pp. 243–255). Elsevier.
Nisa H, Kamili AN, Nawchoo IA, Shafi S, Shameem N, Bandh SA. 2015. Fungal endophytes as prolific sources of phytochemicals and other bioactive natural products: A review. Microbial Pathogenesis 82:50–59.
Nnagadesi PK, Arya A. 2015. Wood decay fungi associated with tamarind tree in Gujarat, India. International Letters of Natural Sciences 46:84–91.
Palmer MG, Mansouripour SNI, Blauer KA, Holmes GJ. 2019. First report of Aspergillus tubingensis causing strawberry fruit rot in California. Plant Disease.
Peter WS, Patrick OH. 2017. Identification of fungi associated with contaminants and species pathogenicity on Tamarindus indica fruits from Maiduguri Monday Market, Borno State, Nigeria. Plant 5(2):36–41.
Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW. 2013. The Botryosphaeriaceae: genera and species known from culture. Studies in Mycology 76:51–167.
Ravindran C, Naveenan T, Varatharaian GR, Rajasabapathy R, Meena RM. 2012. Antioxidants in mangrove plants and endophytic fungal associations. Botanica Marina 55:269–279.
Sabra M, Aboulnasr A, Franken P, Perreca E, Wright LP, Camehl I. 2018. Beneficial root endophytic fungi increase growth and quality parameters of sweet basil in heavy metal contaminated soil. Frontiers in Plant Science 8:1726.
Serrato-Diaz LM, Rivera-Vargas LI, French-Monar RD. 2014. First report of Diaporthe pseudomangiferae causing inflorescence rot, rachis canker, and flower abortion of mango. Plant Disease.
Spellerberg IF. 2013. Encyclopedia of Ecology. Lincoln (NZ): University Press. pp. 3249–3252.
Supaphon P, Preedanon S. 2019. Evaluation of in vitro alpha-glucosidase inhibitory, antimicrobial, and cytotoxic activities of secondary metabolites from the endophytic fungus Nigrospora sphaerica isolated from Helianthus annuus. Annals of Microbiology 69:1397–1406.
Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10:512–526.
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution 30:2725–2729.
Tan YP, Edwards J, Grice KRE, Shivas RG. 2013. Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia. Fungal Diversity 61.
Udayanga D, Liu X, McKenzie EHC, Chukeatirote E, Bahkali AHA, Hyde KD. 2011. The genus Phomopsis: biology, applications, species concepts and names of common pathogens. Fungal Diversity 50:189–225.
Wang M, Liu F, Crous PW, Cai L. 2017. Phylogenetic reassessment of Nigrospora: ubiquitous endophytes, plant and human pathogens. Persoonia 39:118–142.
Weir BS, Johnston PR, Damm U. 2012. The Colletotrichum gloeosporioides species complex. Studies in Mycology 73:115–180.
White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds.). PCR Protocols: A Guide to Methods and Applications. San Diego: Academic Press. pp. 315–322.
Xia Y, Sahib MR, Amna A, Opiyo SO, Zhao Z, Gao Y. 2019. Culturable endophytic fungal communities associated with plants in organic and conventional farming systems and their effects on plant growth. Scientific Reports 9:1669.
Zhang K, Su YY, Cai L. 2013. Morphological and phylogenetic characterisation of two new species of Phyllosticta from China. Mycological Progress 12:547–556.
Copyright (c) 2022 Nur Ain Izzati Mohd Zainudin, Nurul Asyiqin Mohd Zaini, Nurul Huwaidah Md Nizam, Dayang Fatin Zafira Awg Zainal Abidin, Nor Izanis Azni Mohd Nazri

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Authors who publish with this journal agree with the following terms:
- Authors retain copyright and grant the journal right of first publication, with the work 1 year after publication simultaneously licensed under a Creative Commons attribution-noncommerical-noderivates 4.0 International License that allows others to share, copy and redistribute the work in any medium or format, but only where the use is for non-commercial purposes and an acknowledgement of the work's authorship and initial publication in this journal is mentioned.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).




