TY - JOUR AU - Sulandari, Sri PY - 2013/06/08 Y2 - 2024/03/29 TI - Mitochondrial DNA variation of the Sumatran elephant in Sumatera JF - BIOTROPIA JA - BIOTROPIA VL - 19 IS - 2 SE - Research Paper DO - 10.11598/btb.2012.19.2.250 UR - https://journal.biotrop.org/index.php/biotropia/article/view/250 SP - AB - <!--[if gte mso 9]><xml> <w:WordDocument> <w:View>Normal</w:View> <w:Zoom>0</w:Zoom> <w:TrackMoves /> <w:TrackFormatting /> <w:DoNotShowRevisions /> <w:DoNotPrintRevisions /> <w:DoNotShowMarkup /> <w:DoNotShowComments /> <w:DoNotShowInsertionsAndDeletions /> <w:DoNotShowPropertyChanges /> <w:PunctuationKerning /> <w:ValidateAgainstSchemas /> <w:SaveIfXMLInvalid>false</w:SaveIfXMLInvalid> <w:IgnoreMixedContent>false</w:IgnoreMixedContent> <w:AlwaysShowPlaceholderText>false</w:AlwaysShowPlaceholderText> <w:DoNotPromoteQF /> <w:LidThemeOther>EN-US</w:LidThemeOther> <w:LidThemeAsian>X-NONE</w:LidThemeAsian> <w:LidThemeComplexScript>X-NONE</w:LidThemeComplexScript> <w:Compatibility> 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mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;}</style> <![endif]--> <p class="MsoNormal" style="text-align: justify;"><span class="longtext1"><span style="font-size: 11pt; background: none repeat scroll 0% 0% white;">A research on </span></span><span style="font-size: 11pt; color: black;">Mitochondrial DNA</span><span style="font-size: 11pt;"> analysis of genetic diversity in Sumatran elephant (<em>Elephas maximus sumatranus</em>) was </span><span class="longtext1"><span style="font-size: 11pt; background: none repeat scroll 0% 0% white;">conducted in this study</span></span><span class="longtext1"><span style="font-size: 11pt;">.<span>  </span>A</span></span><span style="font-size: 11pt;"> 630 bp segment of mitochondrial DNA was amplified <span class="longtext1"><span>on 105 samples of Sumatran elephant from 5 locations in Sumatera (Bentayan, Sugihan, Bukit Salero Lahat, Seblat, Way Kambas) </span></span>using a set of primers: MDL3 (</span><span class="longtext1"><span style="font-size: 11pt; background: none repeat scroll 0% 0% white;" lang="IN">5’-</span></span><span style="font-size: 11pt; color: black;" lang="IN">CCCACAAT-TAATGGGCCC-GGAGCG</span><span class="longtext1"><span style="font-size: 11pt; background: none repeat scroll 0% 0% white;" lang="IN">-3’) </span></span><span style="font-size: 11pt;">and MDL5 </span><span class="longtext1"><span style="font-size: 11pt; background: none repeat scroll 0% 0% white;" lang="IN">(5’-</span></span><span style="font-size: 11pt; color: black;" lang="IN">TTACATGAATTGGCAGCCA-ACCAG-3’). </span><span style="font-size: 11pt;">The objectives of this study is </span><span style="font-size: 11pt;">to generate mitochondrial DNA D-loop sequences for all the Sumatran elephant samples under this study<span class="longtext1"><span style="background: none repeat scroll 0% 0% white;"> and<span>  </span>to provide information haplotypes and nucleotide diversity of<span>  </span>Sumatran elephant populations.</span></span><span class="longtext1"></span></span></p> <p class="MsoNormal" style="text-align: justify;"><span style="font-size: 11pt; color: black;" lang="EN"><span>            </span>A total of 105 PCR product were successfully sequenced perfectly, with an average length of about 616 base pairs. <span style="background: none repeat scroll 0% 0% #e6ecf9;">However, mitochondrial DNA fragments<span>  </span>for this analysis used the first 601 bases. </span>Results showed six haplotypes (BP, BT, BS, BR, BX and BY) identified in Sumatera.<span>  </span></span><span style="font-size: 11pt; color: black;">The most of the sampled individuals are the haplotipe BT. </span><span style="font-size: 11pt; color: black;" lang="EN">BX and BY are most likely new haplotypes.. </span><span style="font-size: 11pt; color: black;"><span> </span>All haplotype, except for the haplotipe BP<span>  </span>are belonging to the Sumatera clade. The haplotipe BX was derived from the haplotipe BT, and the haplotype<span>  </span>BY was derived from the haplotipe BS by one transversion respectively. The other substitutions in this network were the transitions. The haplotype BP is widely distribute from Sri Lanka, Sumatera, Peninsular Malay<span>  </span>and China). Although reported that the haplotype BU distributed Sumatera and Peninsular Malay, but BU haplotype not detected in this study.</span></p> <p class="MsoNormal" style="text-align: justify;"><span style="font-size: 11pt; color: black;"><span>            </span>G<span class="longtext"><span style="background: none repeat scroll 0% 0% #ebeff9;">enetic distances within populations in Bentayan, Bukit Salero Lahat, Seblat, Sugihan and Way Kambas ranged from 0.0000 - 0003, and the genetic distance between the populations that is 0.0000 - 0. </span>0022.<span style="background: none repeat scroll 0% 0% white;"> The distance between haplotypes of Sumatran elephant’s population is low.• The diversity of haplotypes and nucleotide in Sumatera island is low, the highest is<span>  </span>in the region of Buki Salero<span>  </span>Lahat and, lowest is in Bentayan and Sugihan. Overall, the results of analysis of Fu and Li's F * test statistic indicates that the population of Sumatran elephants in Sumatra is -0.78871, which means there is no inbreeding, but not significant at P> 0:10.</span></span></span></p> <p class="MsoNormal" style="text-align: justify; line-height: 150%;"><span style="font-size: 11pt; line-height: 150%; color: black;"> </span></p> <p class="MsoNormal" style="text-align: justify;"><strong><span style="font-size: 11pt;">Keywords : </span></strong><span style="font-size: 11pt;">Sumatran elephant, <em>Elephas maximus<span>  </span>sumatranus</em>, mitochondrial DNA, haplotype</span></p> ER -